Biologie Synthétique et Systémique

Sun. 21

Mon. 22

Tue. 23

Wed. 24

09:00

10:00

11:00

12:00

13:00

14:00

15:00

16:00

17:00

18:00

19:00

20:00

21:00

22:00

Registration

17:00 - 19:00 (2h)

Registration

Registration Time, come and take your badge and booklet!!

Welcome, Opening

19:00 - 19:15 (15min)

Welcome, Opening

Amphi Fourier, INSA Toulouse

Jean-Loup Faulon and Gilles Truan

General Presentation

19:15 - 20:00 (45min)

General Presentation

Amphi Fourier, INSA Toulouse

› RNA aptamers as genetic control devices – the potential of riboswitches as synthetic elements for regulating gene expression - Guest Speaker: Beatrix Suess, TU Darmstadt, Germany 19:15-20:00 (45min)

Dinner

20:00 - 22:00 (2h)

Dinner

Hall de la Bib, INSA Toulouse

Interfacing Biology and Computing

9:00 - 10:15 (1h15)

Interfacing Biology and Computing

Amphi Fourier, INSA Toulouse

Chairman: Yannick Rondelez

› Micro-compartments with programmable behavior - Keynote Speaker: Yannick Rondelez, Gulliver, Paris, France 09:00-09:45 (45min)

› Life engineering using virtual organisms – iMEAN startup - Rémi Peyraud, iMEAN 09:45-10:15 (30min)

Coffee break

10:15 - 11:00 (45min)

Coffee break

Amphi Fourier, INSA Toulouse

Interfacing Biology and Computing

11:00 - 12:00 (1h)

Interfacing Biology and Computing

Amphi Fourier, INSA Toulouse

Chaiman: Yannick Rondelez

› Plug-and-Play Metabolic Transducers Expand the Chemical Detection Space of Cell-Free Biosensors - Peter Voyvodic, Centre de Biochimie Structurale [Montpellier] 11:00-11:30 (30min)

› Signaling and differentiation in multi-compartimentalized in vitro gene circuits - Aurore Dupin, Technische Universität München, Munchen, Germany 11:30-12:00 (30min)

Lunch & Posters

12:00 - 13:45 (1h45)

Lunch & Posters

Hall de la Bib, INSA Toulouse

EUSynBioS Presentation

13:45 - 14:00 (15min)

EUSynBioS Presentation

Amphi Fourier, INSA Toulouse

Christian Boehm

Reengineering Biology
Synthetic Biology National Associations
Coffee break

14:00 - 15:45 (1h45)

Reengineering Biology

Amphi Fourier, INSA Toulouse

Chairman: Jérôme Bonnet

› A Modular Receptor Platform To Expand the Sensing Repertoire of Bacteria - Keynote Speaker: Jerome Bonnet,CBS, Montpellier, France 14:00-14:45 (45min)

› Synthetic transcriptional networks and biophysical modelling enable cross-species expression and metabolic engineering - Manish Kushwaha, Penn State University, USA; MICALIS, Jouy-en-Josas, France 14:45-15:15 (30min)

› Exploring the design space of compacted recombinase logic circuits. - Sarah Guiziou, Centre de Biochimie Structurale, Montpellier, France 15:15-15:45 (30min)

14:45 - 16:15 (1h30)

Synthetic Biology National Associations

Amphi Riquet

› SynBio Canada - Samir Hamadache, SynBio Canada 14:45-15:00 (15min)

› SynBio UK - 15:00-15:15 (15min)

› EBRC (Engineering Biology Research Consortium) - Cassandra Barrett, EBRC 15:15-15:30 (15min)

› GASB (German Association for Synthetic Biology) - Max Mundt, GASB (German Association for Synthetic Biology) 15:30-15:45 (15min)

› EUSynBioS - Christian Boehm, EUSynBioS 15:45-16:00 (15min)

› SynBio Australasia - 16:00-16:15 (15min)

15:45 - 16:30 (45min)

Coffee break

Amphi Fourier, INSA Toulouse

Reengineering Biology

16:30 - 17:30 (1h)

Reengineering Biology

Amphi Fourier, INSA Toulouse

Chairman: Jérôme Bonnet

› Efficient implementation of the carotenoid synthesis by enzyme-fusion strategies in Saccharomyces cerevisiae - Thomas Lautier, LISBP, Toulouse, France 16:30-17:00 (30min)

› Engineering M. pneumoniae cells for production of saturated fatty acids - Luis Garcia, INRA, Villenave d'Ornon, France 17:00-17:30 (30min)

Breakout Session EUSynBios

17:30 - 19:30 (2h)

Breakout Session EUSynBios

Hall de la Bib, INSA Toulouse

› Opportunities and Challenges of Building an Academic Career on Synbio - Pablo Ivan Nikel, Group Leader at The Novo Nordisk Foundation Center for Biosustainability (Copenhagen, DK) 17:30-19:30 (2h)

› Science Communication - Nadine Bongaerts - PhD at Inserm (Paris,FR) /Vice President at Hello Tomorrow 17:30-19:30 (2h)

› Standards in Synthetic Biology - Konstantinos Vavitsas, CSIRO Future Fellow at The University of Queensland (Brisbane, AU) 17:30-19:30 (2h)

Gala Dinner

20:00 - 22:30 (2h30)

Gala Dinner

Restaurant le Moai, Museum d'Histoire Naturelle Toulouse

Synthetic Biology and Environment

9:00 - 10:15 (1h15)

Synthetic Biology and Environment

Amphi Fourier, INSA Toulouse

Manuel Porcar

› Standards in biology: to be or not to be - Guest Speaker: Manuel Porcar, University of Valencia, Spain 09:00-09:45 (45min)

› Multiple Parameters Drive the Efficiency of CRISPR/Cas9- Induced Gene Modifications in Yarrowia lipolytica - Vinciane Borsenberger, Laboratoire d'Ingénierie des Systèmes Biologiques, Toulouse, France 09:45-10:15 (30min)

Coffee break

10:15 - 11:00 (45min)

Coffee break

Amphi Fourier, INSA Toulouse

Synthetic Biology and Environment

11:00 - 12:30 (1h30)

Synthetic Biology and Environment

Amphi Fourier, INSA Toulouse

Manuel Porcar

› Implementation of a reductive route of one-carbon assimilation in Escherichia coli through directed evolution - Volker Doring, Génomique métabolique, Evry, France 11:00-11:30 (30min)

› Fitness impact of altering cell-to-cell variability in expression of a yeast gene - Fabien Duveau, University of Michigan - EEB Department, Fabien Duveau 11:30-12:00 (30min)

› Designing new metabolic pathways by combining systems biology and artificial intelligence - Lucas Marmiesse, iMEAN 12:00-12:30 (30min)

Lunch

12:30 - 14:00 (1h30)

Lunch

Hall de la Bib, INSA Toulouse

Young Researchers Session

14:00 - 16:00 (2h)

Young Researchers Session

Amphi Fourier, INSA Toulouse

Short talks

› Relationship between protein production and cell physiology - Olivier Borkowski, MICrobiologie de l'ALImentation au Service de la Santé humaine 14:00-14:45 (45min)

› Design of novel bioprocesses for the pharmaceutical and chemical industry - Sven Panke, Bioprocess Laboratory D-BSSE, ETH Zürich 14:45-15:30 (45min)

› Combined Genomic and Metabolomic Approaches to Antibiotic Discovery - Emily Abraham, University of St. Andrews 15:30-15:45 (15min)

› Engineering and designing synthetic biological tools for Desulfovibrio alaskensis - Miguel Cueva, School of Biological Sciences, University of Edinburgh 15:45-16:00 (15min)

Coffee break

16:00 - 16:30 (30min)

Coffee break

Amphi Fourier, INSA Toulouse

Young Researchers Session

16:30 - 17:45 (1h15)

Young Researchers Session

Amphi Fourier, INSA Toulouse

Short talks

› Water contamination by anti-cancer drugs: a major issue - development of a bacterial bioreactor for hospital wastewater depollution - Dao Ousmane, Paris Saclay 16:30-16:45 (15min)

› Development of new broad substrate specificity halogenases - Danai-Stella Gkotsi, University of St. Andrews 16:45-17:00 (15min)

› Synthetic noise control in eukaryotic gene expression and signal transduction - Max Mundt, Max Planck Institute for Terrestrial Microbiology 17:00-17:15 (15min)

› Understanding and expanding the cyanobacterial potential for terpenoid production - Konstantinos Vavitsas, University of Queensland [Brisbane] 17:15-17:30 (15min)

› OligoMet: Metabolic chassis for versatile production of oligosaccharides - Pietro Tedesco, Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés 17:30-17:45 (15min)

Understanding the framework conditions for a successful bioeconomy

17:45 - 18:30 (45min)

Understanding the framework conditions for a successful bioeconomy

Amphi Fourier, INSA Toulouse

Lorie Hamelin (LISBP, FR)

Round Table

18:30 - 19:45 (1h15)

Round Table

Amphi Fourier, INSA Toulouse

Olivier Borkowski, Jean Marie François, Lorie Hamelin, Pierre Monsan, Sven Panke

Dinner

20:00 - 22:30 (2h30)

Dinner

Hall de la Bib, INSA Toulouse

Synthetic Biology and Health

9:00 - 10:15 (1h15)

Synthetic Biology and Health

Amphi Fourier, INSA Toulouse

Chairman: Meriem El Karoui

› DNA double-strand break repair at the single molecule level in bacteria - Keynote Speaker: Meriem El Karoui, School of Biological Sciences, Edinburgh, UK 09:00-09:45 (45min)

› Extension of synthetic biology methods for the genome engineering of Mycoplasma feriruminatoris - Vincent Talenton, INRA, Villenave d'Ornon, France 09:45-10:15 (30min)

Coffee break

10:15 - 11:00 (45min)

Coffee break

Amphi Fourier, INSA Toulouse

Synthetic Biology and Health

11:00 - 12:30 (1h30)

Synthetic Biology and Health

Amphi Fourier, INSA Toulouse

Chairman: Meriem El Karoui

› A system biology approach revealed the nature and the cause of the different metabolic features of the weak and strong antibiotic producers, Streptomyces lividans and Streptomyces coelicolor. - Marie-Joelle Virolle, I2BC, Orsay, France 11:00-11:30 (30min)

› A novel synthetic pathway for methanol utilization in E. coli - Alessandro de Simone, LISBP 11:30-12:00 (30min)

› Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors - François ROUSSET, ED 515 - Complexité du vivant, Biologie de Synthèse 12:00-12:30 (30min)

Closing Remarks

12:30 - 12:45 (15min)

Closing Remarks

Amphi Fourier, INSA Toulouse

Jean-Loup Faulon and Gilles Truan